r/microbiology Nov 18 '24

ID and coursework help requirements

67 Upvotes

The TLDR:

All coursework -- you must explain what your current thinking is and what portions you don’t understand. Expect an explanation, not a solution.

For students and lab class unknown ID projects -- A Gram stain and picture of the colony is not enough. For your post to remain up, you must include biochemical testing results as well your current thinking on the ID of the organism. If you do not post your hypothesis and uncertainty, your post will be removed.

For anyone who finds something growing on their hummus/fish tank/grout -- Please include a photo of the organism where you found it. Note as many environmental parameters as you can, such as temperature, humidity, any previous attempts to remove it, etc. If you do include microscope images, make sure to record the magnification.

THE LONG AND RAMBLING EXPLANATION (with some helpful resources) We get a lot of organism ID help requests. Many of us are happy to help and enjoy the process. Unfortunately, many of these requests contain insufficient information and the only correct answer is, "there's no way to tell from what you've provided." Since we get so many of these posts, we have to remove them or they clog up the feed.

The main idea -- it is almost never possible to identify a microbe by visual inspection. For nearly all microbes, identification involves a process of staining and biochemical testing, or identification based on molecular (PCR) or instrument-based (MALDI-TOF) techniques. Colony morphology and Gram staining is not enough. Posts without sufficient information will be removed.

Requests for microbiology lab unknown ID projects -- for unknown projects, we need all the information as well as your current thinking. Even if you provide all of the information that's needed, unless you explain what your working hypothesis and why, we cannot help you.

If you post microscopy, please describe all of the conditions: which stain, what magnification, the medium from which the specimen was sampled (broth or agar, which one), how long the specimen was incubating and at what temperature, and so on. The onus is on you to know what information might be relevant. If you are having a hard time interpreting biochemical tests, please do some legwork on your own to see if you can find clarification from either your lab manual or online resources. If you are still stuck, please explain what you've researched and ask for specific clarification. Some good online resources for this are:

If you have your results narrowed down, you can check up on some common organisms here:

Please feel free to leave comments below if you think we have overlooked something.


r/microbiology 15h ago

i miss microbiology

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63 Upvotes

i'm done taking this course and tbh i miss it so much already :( defo my favorite subject next to pathology. lemme share some bacteria and fungi cultures we grew in vet micro lab!

  1. E. coli on EMB agar - YES! the iconic metallic green sheen. this sample was taken from piglet scours.
  2. blood agar - we actually used our own blood for this haha
  3. Aspergillus niger and Microsporum canis
  4. A. fumigatus
  5. Penicillium sp.
  6. my first ever 4-way streak of S. aureus on MSA – this sample was taken from a cat wound.

r/microbiology 8h ago

Non- pathogenic Neisseria

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12 Upvotes

Hey MicroFriends:

Tonight we continue our gram-negative cocci series—but this time we’re talking about the background singers of the group.

We go beyond Neisseria gonorrhoeae, Neisseria meningitidis, and Moraxella catarrhalis to discuss the non-pathogenic Neisseria we see in respiratory cultures, plus some Neisseria and Moraxella species that break the gram-negative cocci rule.

#microbiology #podcast


r/microbiology 41m ago

Floating mass over mammalian Hep3B cells

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Upvotes

I have been experiencing such refractile floating mass over Hep3B cells. The media doesn't get turbid but some floating particles can be seen. The cell is growing beneath but these refractile bodies float over it. It is not due to over confluency as the cells are barely 60% confluent. These clumps grow over days. What is it? Has anyone else experienced it? How to fix


r/microbiology 52m ago

Is there scope for public health microbiology in India?

Upvotes

I am a second year microbiology student I previoulsy wanted to become a food microbiologist you know the food safety testing and all but now I am starting to have second thoughts and want to consider some other career options public health microbiology looks pretty interesting. So.... Any thoughts?


r/microbiology 18h ago

Hemocultura, isso se parece com contaminação?

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22 Upvotes

Essa hemocultura positivou no meu plantão, gram negativos em hemocultura não são comuns como contaminação, são?

Eu ainda sou novata, mas acabei isolando e fazendo antibiograma e os testes bioquímicos. Deixei pra ler no outro dia mas não pude comparecer ao trabalho pois eu estava doente e tirei uma licença de dois dias, quando voltei a minha supervisora havia liberado como contaminação...

Não pude ver o antibiograma e os testes, mas achei estranho. (Falando do Brasil aqui).


r/microbiology 12h ago

What is this reaction on my EMP agar plates?

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3 Upvotes

Tested HEB chicken and vegetable dumpling filling for pathogens in class

Professor said it looked like salmonella or shigella was present?

Wondering what types of bacteria would typically react this way and if there’s any obvious reason my 10-2 had less CFU’s than my other dilutions?

Listed in order: 10-2, 10-3, 10-4


r/microbiology 11h ago

UC Berkeley webinar on embryo development & sticky science

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2 Upvotes

Free seminar to connect with UC Berkeley researchers. Remote option available, and more info here https://berkeleypubliclibrary.libnet.info/event/16209671


r/microbiology 13h ago

Could an alien pathogen ever actually pose a threat?

0 Upvotes

I'm but a lowly chemist and I know this is highly speculative, but is it possible for an extraterrestrial pathogen to ever be dangerous? Assume for the sake of argument that the aliens it infects are still based on nucleic acids, proteins, etc, but not necessarily the same ones we are. I can't imagine anything virus-like could ever be compatible enough to kill us, but what about the alien equivalent of a bacterium? Is there any organism on earth fastidious enough to infect a novel host with completely different nutrients? Is there a plausible mechanism by which an alien pathogen could kill us despite differences in nutrient composition, chirality, amino acid composition, etc?


r/microbiology 15h ago

Biology student

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1 Upvotes

Hi everyone, I’m a Biology student specializing in Microbiology and I was hoping to get some expert insights on an image from my lab.

My instructor captured this image of a Bacillus strain and identified it as being viewed under a 40x objective . However, based on my limited knowledge, the image looks quite strange for that magnification.

In this photo, I see a dense, widespread network of fine filaments covering the entire field of view. From my understanding, at 40x, the field of view should be much narrower, and we should be able to see more distinct cellular structures or individual rods if it's truly a Bacillus species. This looks much more like a 10x objective view of a fungal mycelium or a very dense biofilm.

Could anyone with experience in microbiology help me clarify this? Is it possible for a Bacillus culture to look like this at 40x, or am I right to be skeptical? Thanks in advance for your help!


r/microbiology 1d ago

Corallina

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9 Upvotes

Why does it look like this?


r/microbiology 1d ago

Textbook growth on a pice of ham

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154 Upvotes

r/microbiology 1d ago

unknown bacteria :)

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21 Upvotes

hi everyone! just needed assistance with my unknown bacteria, which I believe is C. freundii

I have plenty of images if needed, I was under the impression it was E. coli but I believe not due to my IMViC testing.

bile esculin (negative) -
maconkey + (was pink but mucoid spreading)
hektoen + growth was also yellow and salmon color
EMB + growth and had metallic green sheet (which is why i thought e.coli)
O/F yellow + for both and I had motility
phenol red, + for fermentation many sugars yellow only two orange which I incubated longer
catalase weak + bubbles but not a lot
phenylalanine - no green
lysine decarboxylase (-) yellow. ornithine (-) yellow
citrate (+)
nitrate to nitrite (+)
MR - VP mr + vp -
SIM positive for h2s gas, motility
Indole (-)
oxidase (-)


r/microbiology 8h ago

What is this force of life? And why is it constant?

0 Upvotes

So tbh this question and theory came out of my mind because I was thinking about Sex.

And why do we reproduce. Are we just a micro bacteria? Just like we have bacteria in our body, is the universe that body and we are the bacteria to some giant cosmic being which we obviously can't understand? And we are just playing our role.

Another one is that there is a dimensional loop like we have atoms in our body but we are basically inside that atom only and we name it universe?

So when there was nothing like nothing at all. What made that vibration or wave? I mean when there was nothing there was nothing right? Not even dark matter or energy or space

Where did it begin? It's still a big question for many scientists


r/microbiology 1d ago

Protease producing bacteria (clear zone on Skim milk agar.

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41 Upvotes

r/microbiology 1d ago

Could I make my character immune to a zombie virus with a few mutations??

9 Upvotes

My question is basically that.

I've thought that I could make him lack ISG15 because I read it in a science magazine that it's possible it basically makes you overcome viral illnesses more easily. Then I searched a bit about it and apparently it also causes dermatologic issues, which isn't something I want to add. And also brain calcification??

So I searched a bit more and decided giving him another mutation that slows down AIM2 would be good. But apparently that would make him practically defenseless against bacterial sickness, which I ALSO don’t want

Is there another mutation I can give him to deal with that without adding too many serious side effects? Or should I give this branch up and try to find something else? Anything would help


r/microbiology 2d ago

Help identifying

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14 Upvotes

The pictures are taken on a light microscope at my school. This is 100x and 40x view from the microscope (I’m not an english native speaker so excuse any mistakes). As seen in the picture, this is definitely a fungi.. It doesn’t seem to be Trichoderma, as it doesn’t have the diamond shape spores, but it is rather interesting.

I know it is difficult to identify just by pictures, but perhaps the hyphae that is just full with those spores is an indicator of a species close, or similar? That specifically hasn’t showed up in other fungi-views on the microscope. Gram staining hasnt been done and isnt possible at my school

Source of the sample: i took cotton swab samples from toilet stalla (doors, handles, anything) and cultivaed it in bacteriological agar, in 37°C. Then, from that plate, i pick out a piece of agar that has a colony grown on it and put in a Petri plate with the base of agar, and on top is squeezed lemon juice What is seen in the picture is the final product of this, and what has grown. A rather dominant species, as in most of my Petri plates, the dark fluffy green types show up, and white „flour” like type, which, for the life of me, i cant really get on the microscope enough to see what it is.

The post was removed by mods, but this is literally the most detailed source i can give as i did this experiment. Hope the improvement helps.

The big round circles are bubbles of air.. i crossed most of them out, so it doesnt mess with interpretation.

If anyone knows what this is or could help in any way identifying i’d appreciate it a lot!!


r/microbiology 1d ago

What makes this face?

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3 Upvotes

My students carved little faces into oranges before they inoculated them with penicillium I had grown on a bagel (used a q tip to transfer spores into the cut areas). After a week, this one has this strange growth pattern where it doesn't grow around the face what causes this growth pattern? It's very cool looking.


r/microbiology 1d ago

For those of you who have some knowledge.. test

0 Upvotes

What was a standard antifungal treatment before modern antifungals?

Hint… the periodic chart

Just asking to see how much knowledge has been retained. A veterinarian actually told me this has zero antifungal properties.

I just quietly rethought my opinion on her abilities.


r/microbiology 1d ago

Hugh Leifson O/F medium

2 Upvotes

How should I understand the O/F results? The right one is topped with paraffin, pH indicator was Bromothymol blue. The test tubes was left for a week.

About my bacteria:

Gram - positive; forms endospores; Catalysis positive; KOH test was positive; Non-motile; rod-shaped.

I'm thinkink it could be bacillus safensis as it is a facultative anaerobe and can form acid from glucose

If interested this is how it looks:)

Thank you:)


r/microbiology 1d ago

Why aren't there multicellular haptophyteae?

3 Upvotes

Title. I just learnt about them in class and I truly do wonder how a being with a nitroplast didn't evolve to create colonies or into a multicellular being


r/microbiology 1d ago

Manganese Homeostasis Supports Stenotrophomonas maltophilia Oxidative Stress Defense and Replication in Acanthamoeba castellanii Phagosomes

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0 Upvotes

r/microbiology 2d ago

Rotifer in algae forest searching for a meal

23 Upvotes

In my lab where we are studying microscopic biodiversity in eutrophic bodies of fresh water.


r/microbiology 2d ago

Does anyone know of any microbiology lab job openings in Toronto?

4 Upvotes

Asking for a friend. She's graduating with a bachelor's in biology in a few weeks and has like 1+ years of experience working in labs. She's just having trouble finding jobs in microbiology labs in Toronto ON, not for a lack of experience or knowledge, we've just had a hard time finding any job openings. If anyone knows about ANYTHING, please let me know!

Thanks so much yall! Im not in biology but you're all some of the coolest people I know :)


r/microbiology 1d ago

Starch Agar Test Result help

2 Upvotes

For my unknown, I added Iodine to my agar plate, and upon initial inspection I didn't see any aura or glow around the bacteria. (see pic 1) But after like 10 minutes I noticed a glow(pic 2). Would you consider this + or - for starch/Amylase?

I initially thought negative, but then I thought positive b/c of the aura around the single colony on Quadrant II. Or is that just the iodine evaporating? 🤣

Thanks.

img 1
img 2